Issues

• Storing raw counts as a layer in final anndata object after running celltypist

  Sanofi-Public/enact-pipeline#71 · Filter by author shimonjude opened on Aug 14, 2026
  1

• How to run ENACT on the synthetic data?

  Sanofi-Public/enact-pipeline#69 · Filter by author weizhu365 opened on Mar 18, 2026

• Running ENACT on space ranger 4 files crash

  Sanofi-Public/enact-pipeline#68 · Filter by author shimonjude opened on Mar 11, 2026
  1

• .btf file issue

  Sanofi-Public/enact-pipeline#67 · Filter by author Achiraa opened on Feb 9, 2026
  9

• Use cell type annotated scRNA-seq as input for annotation?

  enhancement
  Sanofi-Public/enact-pipeline#64 · Filter by author KunHHE opened on Sep 27, 2025
  1

• Incompatible Key Frame

  help wanted
  Sanofi-Public/enact-pipeline#63 · Filter by author lindsdudley opened on Sep 25, 2025
  2

• receiving this error : make: *** [Makefile:14: run_enact] Error 1

  Sanofi-Public/enact-pipeline#62 · Filter by author avpatel18 opened on Aug 15, 2025
  1

• IndexError when using .btf image (converted to .tiff) with ENACT

  Sanofi-Public/enact-pipeline#60 · Filter by author danjah21 opened on Jul 29, 2025
  3

• Spaceranger v4.0 released on 6/12 does cell/nucleus segmentation now, possible to use their custom Stardist model with ENACT?

  enhancement
  Sanofi-Public/enact-pipeline#54 · Filter by author sudarshan227 opened on Jun 14, 2025
  2

• AttributeError: 'MultiPolygon' object has no attribute 'exterior'

  Bug

  Sanofi-Public/enact-pipeline#46 · Filter by author meaksu opened on May 15, 2025
  5