Issues

• khmer is unmaintained. what now?

  dib-lab/khmer#1928 · Filter by author ctb opened on Jul 15, 2024
  4

• Installation fails with Python 3.12

  dib-lab/khmer#1927 · Filter by author mikemc opened on May 23, 2024
  3

• New count-min estimator

  dib-lab/khmer#1921 · Filter by author jianshu93 opened on Oct 19, 2023

• Result differences from input bias

  dib-lab/khmer#1918 · Filter by author JuantonioMS opened on Aug 25, 2022
  3

• normalize-by-median.py the total of the reads indicated in the report does not match the input

  dib-lab/khmer#1916 · Filter by author mainavienne opened on Mar 8, 2022

• LICENSE bug report

  dib-lab/khmer#1915 · Filter by author hyandell opened on Aug 6, 2021
  2

• Error when Interleaving data

  dib-lab/khmer#1914 · Filter by author howla1ke opened on Jun 17, 2021
  1

• load-graph.py runtime

  dib-lab/khmer#1911 · Filter by author Mewgia opened on Mar 17, 2021
  1

• Error in khmer installation

  dib-lab/khmer#1909 · Filter by author HM-Anas opened on Dec 12, 2020

• Malformed citation file

  dib-lab/khmer#1906 · Filter by author Lyannic opened on Jun 24, 2020

• Is the normalize-by-median.py script deterministic?

  dib-lab/khmer#1905 · Filter by author zmunro opened on Jun 12, 2020
  2

• Khmer (specifically reverse_complement) only intended for upper-case sequences?

  dib-lab/khmer#1904 · Filter by author dkoslicki opened on Mar 20, 2020
  2

• Normalize-by-median.py script as a module

  dib-lab/khmer#1901 · Filter by author zmunro opened on Dec 17, 2019
  1

• Is a nodegraph a bloom filter?

  dib-lab/khmer#1898 · Filter by author olgabot opened on Nov 5, 2019
  3

• Convert fasta into a Numeric Summarization Vector (NSV)

  dib-lab/khmer#1895 · Filter by author solshiferaw opened on Sep 26, 2019
  2

• Is there a way to extract kmers from abundance-dist?

  dib-lab/khmer#1894 · Filter by author snafees opened on Sep 19, 2019
  1

• Where can I find documentation on Countgraph ?

  dib-lab/khmer#1892 · Filter by author Nortalle opened on Jul 19, 2019
  1

• Publish v3 alpha/beta docs

  Documentationlow-hanging-fruittheme:customer-oriented
  dib-lab/khmer#1891 · Filter by author mr-c opened on Jun 19, 2019

• Can I get the detailed K-mer abundance information?

  dib-lab/khmer#1890 · Filter by author ZhuangZK opened on May 13, 2019
  2

• Proper Cython support

  Cythonenhancement
  dib-lab/khmer#1886 · Filter by author standage opened on Feb 13, 2019

• Add -q flag to interleave-reads.py and extract-paired-reads.py

  dib-lab/khmer#1883 · Filter by author halexand opened on Dec 18, 2018
  1

• Need Help -

  dib-lab/khmer#1880 · Filter by author taranglute opened on Sep 18, 2018

• No local packages or download links found for pytest-runner

  dib-lab/khmer#1879 · Filter by author LujingF opened on Sep 3, 2018
  1

• Suggested parameters for super-deeply (~2 billion reads) sequenced genomes?

  dib-lab/khmer#1878 · Filter by author olgabot opened on Aug 27, 2018

• Read attributes inaccessible via multiprocessing pool

  dib-lab/khmer#1877 · Filter by author dkoslicki opened on Aug 19, 2018