Issues

• AnnData subclass modalities (e.g. TreeData) lose their extra elements and type on write_h5mu/write_zarr + read

  scverse/mudata#210 · Filter by author pedrocr83 opened on Oct 10, 2026
  8

• read_h5mu() fails on files written by mudata <= 0.1.1 (encoding-type "AnnData")

  Bug

  scverse/mudata#209 · Filter by author Sizerta opened on Oct 10, 2026

• Integration Testing CI Test Failure on python 3.14 with prerelease dependencies

  scverse/mudata#205 · Filter by author scverse-issue-creator opened on Oct 1, 2026

• Fully type

  Task

  scverse/mudata#196 · Filter by author Zethson opened on Sep 6, 2026
  2

  

• Mapping between features for MS-proteomics support

  enhancement
  scverse/mudata#111 · Filter by author lucas-diedrich opened on Dec 19, 2025
  21

• Concat on disk

  enhancement
  scverse/mudata#98 · Filter by author joshchiou opened on Apr 15, 2025
  3

• Arbitrary dimensional slicing

  enhancement
  scverse/mudata#83 · Filter by author eroell opened on Oct 22, 2024
  3

  

• Unification of mudata.read and anndata.read

  enhancement
  scverse/mudata#76 · Filter by author MUCDK opened on Aug 26, 2024
  4

• Pull or push .obsm or .varm annotations.

  enhancement
  scverse/mudata#72 · Filter by author Marius1311 opened on Jul 25, 2024
  2

• Interface to get tensors from MuData

  enhancement
  scverse/mudata#38 · Filter by author gtca opened on Feb 1, 2023

• Introduce explicit syntax to detach backed modalities

  enhancement
  scverse/mudata#192 · Filter by author gtca opened on Dec 14, 2020